On the wheel dots: if wheels were proven defective after inspection, they got a white dot (not yellow) and the wheels had to be replaced within the year.
For the ACI plates, different railroads had different practices. I model SOU, ICG, and a little GM&O. The GM&O, even into the ICG era, did not always have ACI plates on their equipment, especially cabooses, while the ICG was pretty good about having ACI plates on theirs. Consult prototype pictures of the era you're modeling.
If you get the set from Microscale, there is a diagram on proper placement on various cars.
For COTS plates, the first ones started as a single box, then they went to two and three sections as time went on. The ones you see on cars now (3 sections) are generally from the 1980s cars. Though, each railroad had their preferences, so check out prototype pictures.